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neuroimagen:md_nph [2021/10/19 07:45]
osotolongo [Implementación]
neuroimagen:md_nph [2021/10/19 09:04] (current)
osotolongo [Uso]
Line 82: Line 82:
 {{ :neuroimagen:wm_mask_indti.png?400 |}} {{ :neuroimagen:wm_mask_indti.png?400 |}}
  
 +y a esta ultima imagen,
  
-y a esta ultima imagen es a la que hay que sacarle el histograma.+{{ :neuroimagen:dti_md_masked.png?400 |}}
  
-:WIP: +es a la que hay que sacarle el histograma.
- +
-Primero leo la DB del proyecto y por cada unos de las imagenes MD que he llegado a procesar ejecuto el procedimiento anterior,+
  
 <code perl> <code perl>
Line 132: Line 131:
  
 <code bash> <code bash>
-[osotolongo@brick03 nph]$ ./nph.pl bioface nph.csv+[osotolongo@brick03 nph]$ ./nph.pl bioface  
 +[osotolongo@brick03 nph]$ head ../bioface_normalised_peak_height.csv 
 +Subject,NPH 
 +0002,0.142459141831309 
 +0003,0.101291664281762 
 +0004,0.128800261523374 
 +0005,0.131614509246088 
 +0006,0.116625745352508 
 +0007,0.142582104338399 
 +0008,0.140059946569362 
 +0009,0.129072904095975 
 +0010,0.12497310864109
 [osotolongo@brick03 nph]$ sed 's/;/,/;1iSubject,Subject_ID' ../bioface_mri.csv > bioface_codes.csv [osotolongo@brick03 nph]$ sed 's/;/,/;1iSubject,Subject_ID' ../bioface_mri.csv > bioface_codes.csv
-[osotolongo@brick03 nph]$ join -t, -j 1 bioface_codes.csv nph.csv | awk -F"," '{print $2","$3}' | csvsort -c 1 > normalised_peak_height.csv +[osotolongo@brick03 nph]$ join -t, -j 1 bioface_codes.csv ../bioface_normalised_peak_height.csv | awk -F"," '{print $2","$3}' | csvsort -c 1 > nph_sorted.csv 
-[osotolongo@brick03 nph]$ head normalised_peak_height.csv+[osotolongo@brick03 nph]$ head nph_sorted.csv
 Subject_ID,NPH Subject_ID,NPH
-B002,0.0731249323687369 +B002,0.142459141831309 
-B003,0.0732767676009448 +B003,0.101291664281762 
-B004,0.0745456763272544 +B004,0.128800261523374 
-B005,0.0746812434988687 +B005,0.131614509246088 
-B006,0.0697899799470258 +B006,0.116625745352508 
-B007,0.0788675577583173 +B007,0.142582104338399 
-B008,0.0932810594443464 +B008,0.140059946569362 
-B009,0.0787428359604322 +B009,0.129072904095975 
-B010,0.0681414831401963+B010,0.12497310864109 
 </code> </code>
  
 **Nota:** Para simplificar he usado //csvsort// de [[https://csvkit.readthedocs.io/en/latest/ | csvkit ]] pero tambien se puede dar una vuelta y usar //gnu sort//. **Nota:** Para simplificar he usado //csvsort// de [[https://csvkit.readthedocs.io/en/latest/ | csvkit ]] pero tambien se puede dar una vuelta y usar //gnu sort//.
neuroimagen/md_nph.1634629550.txt.gz · Last modified: 2021/10/19 07:45 by osotolongo