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--- neuroimagen:md_nph [2021/10/19 07:45]
osotolongo [Implementación]
+++ neuroimagen:md_nph [2021/10/19 09:04]
osotolongo [Uso]
@@ Line 82: / Line 82: @@
 {{ :neuroimagen:wm_mask_indti.png?400 |}}
+y a esta ultima imagen,
-y a esta ultima imagen es a la que hay que sacarle el histograma.
+{{ :neuroimagen:dti_md_masked.png?400 |}}
-:WIP:
+es a la que hay que sacarle el histograma.
-Primero leo la DB del proyecto y por cada unos de las imagenes MD que he llegado a procesar ejecuto el procedimiento anterior,
 <code perl>
@@ Line 132: / Line 131: @@
 <code bash>
-[osotolongo@brick03 nph]$ ./nph.pl bioface > nph.csv
+[osotolongo@brick03 nph]$ ./nph.pl bioface
+[osotolongo@brick03 nph]$ head ../bioface_normalised_peak_height.csv
+Subject,NPH
+,0.142459141831309
+,0.101291664281762
+,0.128800261523374
+,0.131614509246088
+,0.116625745352508
+,0.142582104338399
+,0.140059946569362
+,0.129072904095975
+,0.12497310864109
 [osotolongo@brick03 nph]$ sed 's/;/,/;1iSubject,Subject_ID' ../bioface_mri.csv > bioface_codes.csv
-[osotolongo@brick03 nph]$ join -t, -j 1 bioface_codes.csv nph.csv | awk -F"," '{print $2","$3}' | csvsort -c 1 > normalised_peak_height.csv
+[osotolongo@brick03 nph]$ join -t, -j 1 bioface_codes.csv ../bioface_normalised_peak_height.csv | awk -F"," '{print $2","$3}' | csvsort -c 1 > nph_sorted.csv
-[osotolongo@brick03 nph]$ head normalised_peak_height.csv
+[osotolongo@brick03 nph]$ head nph_sorted.csv
 Subject_ID,NPH
-B002,0.0731249323687369
+B002,0.142459141831309
-B003,0.0732767676009448
+B003,0.101291664281762
-B004,0.0745456763272544
+B004,0.128800261523374
-B005,0.0746812434988687
+B005,0.131614509246088
-B006,0.0697899799470258
+B006,0.116625745352508
-B007,0.0788675577583173
+B007,0.142582104338399
-B008,0.0932810594443464
+B008,0.140059946569362
-B009,0.0787428359604322
+B009,0.129072904095975
-B010,0.0681414831401963
+B010,0.12497310864109
 </code>
 **Nota:** Para simplificar he usado //csvsort// de [[https://csvkit.readthedocs.io/en/latest/ | csvkit ]] pero tambien se puede dar una vuelta y usar //gnu sort//.

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