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So, do you wanna make spatial smoothing with FSL?

You can use:

$ fslmaths original.nii -kernel gauss 2.1233226 -fmean smoothed.nii

The gaussian kernel takes its argument as sigma in mm instead of the FWHM, but you can see how to convert between these two values here:

Basically, divide your FWHM (in mm) by 2.3548 to get sigma.

neuroimagen/fsl_smooth.txt · Last modified: 2020/08/04 10:58 by