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neuroimagen:fbb [2016/05/05 09:07]
osotolongo [Postprocessing (carrot)]
neuroimagen:fbb [2021/03/10 10:24] (current)
osotolongo [Correccion de movimiento]
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 ====== Problemas con el procesamiento de FBB y como no morir en el intento ====== ====== Problemas con el procesamiento de FBB y como no morir en el intento ======
  
-==== de DICOM a NiFTI ====+==== bulk conversion ==== 
 + 
 +Voy a escribir un procedimiento nuevo para la conversion de DCM a NIfTI aprovechando que tengo nuevos procedimientos y software para todo. 
 + 
 +Primero, 
 +<code> 
 +[osotolongo@detritus facehbi]$ ls /nas/clinic/facehbi 
 +FACEHBI-F001B  FACEHBI-F018B  FACEHBI-F036B  FACEHBI-F055B  FACEHBI-F072B  FACEHBI-F088B  FACEHBI-F105B  FACEHBI-F122B FACEHBI-F139B  FACEHBI-F155B  FACEHBI-F171B  FACEHBI-F191B  FACEHBI-F208B 
 +FACEHBI-F002B  FACEHBI-F019B  FACEHBI-F037B  FACEHBI-F056B  FACEHBI-F073B  FACEHBI-F089B  FACEHBI-F106B  FACEHBI-F123B FACEHBI-F140B  FACEHBI-F156B  FACEHBI-F173B  FACEHBI-F192B  FACEHBI-F209B 
 +FACEHBI-F003B  FACEHBI-F020B  FACEHBI-F038B  FACEHBI-F057B  FACEHBI-F074B  FACEHBI-F090B  FACEHBI-F107B  FACEHBI-F124B FACEHBI-F141B  FACEHBI-F157B  FACEHBI-F174B  FACEHBI-F193B  FACEHBI-F210B 
 +FACEHBI-F004B  FACEHBI-F021B  FACEHBI-F039B  FACEHBI-F058B  FACEHBI-F075B  FACEHBI-F091B  FACEHBI-F108B  FACEHBI-F125B FACEHBI-F142B  FACEHBI-F158B  FACEHBI-F175B  FACEHBI-F194B  FACEHBI-F211B 
 +FACEHBI-F005B  FACEHBI-F022B  FACEHBI-F040B  FACEHBI-F059B  FACEHBI-F076B  FACEHBI-F092B  FACEHBI-F109B  FACEHBI-F126B FACEHBI-F143B  FACEHBI-F159B  FACEHBI-F177B  FACEHBI-F195B  FACEHBI-F212B 
 +FACEHBI-F006B  FACEHBI-F023B  FACEHBI-F041B  FACEHBI-F060B  FACEHBI-F077B  FACEHBI-F093B  FACEHBI-F110B  FACEHBI-F127B FACEHBI-F144B  FACEHBI-F160B  FACEHBI-F178B  FACEHBI-F196B  FACEHBI-F213B 
 +FACEHBI-F007B  FACEHBI-F024B  FACEHBI-F042B  FACEHBI-F061B  FACEHBI-F078B  FACEHBI-F094B  FACEHBI-F111B  FACEHBI-F128B FACEHBI-F145B  FACEHBI-F161B  FACEHBI-F179B  FACEHBI-F197B  FACEHBI-F214B 
 +FACEHBI-F008B  FACEHBI-F025B  FACEHBI-F043B  FACEHBI-F062B  FACEHBI-F079B  FACEHBI-F095B  FACEHBI-F112B  FACEHBI-F129B FACEHBI-F146B  FACEHBI-F162B  FACEHBI-F181B  FACEHBI-F198B  FACEHBI-F215B 
 +FACEHBI-F009B  FACEHBI-F026B  FACEHBI-F044B  FACEHBI-F063B  FACEHBI-F080B  FACEHBI-F096B  FACEHBI-F113B  FACEHBI-F130B FACEHBI-F147B  FACEHBI-F163B  FACEHBI-F182B  FACEHBI-F199B 
 +FACEHBI-F010B  FACEHBI-F027B  FACEHBI-F047B  FACEHBI-F064B  FACEHBI-F081B  FACEHBI-F097B  FACEHBI-F115B  FACEHBI-F131B FACEHBI-F148B  FACEHBI-F164B  FACEHBI-F183B  FACEHBI-F200B 
 +FACEHBI-F011B  FACEHBI-F028B  FACEHBI-F048B  FACEHBI-F065B  FACEHBI-F082B  FACEHBI-F098B  FACEHBI-F116B  FACEHBI-F132B FACEHBI-F149B  FACEHBI-F165B  FACEHBI-F184B  FACEHBI-F201B 
 +FACEHBI-F012B  FACEHBI-F029B  FACEHBI-F049B  FACEHBI-F066B  FACEHBI-F083B  FACEHBI-F099B  FACEHBI-F117B  FACEHBI-F133B FACEHBI-F150B  FACEHBI-F166B  FACEHBI-F185B  FACEHBI-F202B 
 +FACEHBI-F013B  FACEHBI-F030B  FACEHBI-F050B  FACEHBI-F068B  FACEHBI-F084B  FACEHBI-F101B  FACEHBI-F118B  FACEHBI-F134B FACEHBI-F151B  FACEHBI-F167B  FACEHBI-F186B  FACEHBI-F203B 
 +FACEHBI-F014B  FACEHBI-F031B  FACEHBI-F052B  FACEHBI-F069B  FACEHBI-F085B  FACEHBI-F102B  FACEHBI-F119B  FACEHBI-F135B FACEHBI-F152B  FACEHBI-F168B  FACEHBI-F188B  FACEHBI-F204B 
 +FACEHBI-F015B  FACEHBI-F033B  FACEHBI-F053B  FACEHBI-F070B  FACEHBI-F086B  FACEHBI-F103B  FACEHBI-F120B  FACEHBI-F136B FACEHBI-F153B  FACEHBI-F169B  FACEHBI-F189B  FACEHBI-F205B 
 +FACEHBI-F017B  FACEHBI-F035B  FACEHBI-F054B  FACEHBI-F071B  FACEHBI-F087B  FACEHBI-F104B  FACEHBI-F121B  FACEHBI-F137B FACEHBI-F154B  FACEHBI-F170B  FACEHBI-F190B  FACEHBI-F207B 
 +[osotolongo@detritus facehbi]$ dcm2niix -o tmp -z y /nas/clinic/facehbi/FACEHBI-F001B/DICOM/ 
 +Chris Rorden's dcm2niiX version v1.0.20180622 (JP2:OpenJPEG) (JP-LS:CharLS) GCC5.5.0 (64-bit Linux) 
 +Found 620 DICOM file(s) 
 +Convert 109 DICOM as tmp/DICOM_FACEHBI_Florbetaben_20min_20141211120511_5 (400x400x109x1) 
 +compress: "/usr/local/mricron/pigz_mricron" -n -f -6 "tmp/DICOM_FACEHBI_Florbetaben_20min_20141211120511_5.nii" 
 +Convert 75 DICOM as tmp/DICOM_FACEHBI_20141211120511_3 (512x512x75x1) 
 +compress: "/usr/local/mricron/pigz_mricron" -n -f -6 "tmp/DICOM_FACEHBI_20141211120511_3.nii" 
 +Convert 436 DICOM as tmp/DICOM_FACEHBI_Florbetaben_4x5min_20141211120511_4 (400x400x109x4) 
 +compress: "/usr/local/mricron/pigz_mricron" -n -f -6 "tmp/DICOM_FACEHBI_Florbetaben_4x5min_20141211120511_4.nii" 
 +Conversion required 105.374635 seconds (6.340000 for core code). 
 +[osotolongo@detritus facehbi]$ ls tmp 
 +DICOM_FACEHBI_20141211120511_3.json    DICOM_FACEHBI_Florbetaben_20min_20141211120511_5.json DICOM_FACEHBI_Florbetaben_4x5min_20141211120511_4.json 
 +DICOM_FACEHBI_20141211120511_3.nii.gz  DICOM_FACEHBI_Florbetaben_20min_20141211120511_5.nii.gz DICOM_FACEHBI_Florbetaben_4x5min_20141211120511_4.nii.gz 
 +[osotolongo@detritus facehbi]$ for x in tmp/*.nii.gz; do fslinfo ${x}; done 
 +data_type      INT16 
 +dim1           512 
 +dim2           512 
 +dim3           75 
 +dim4           1 
 +datatype       4 
 +pixdim1        0.585938 
 +pixdim2        0.585938 
 +pixdim3        3.000000 
 +pixdim4        0.000000 
 +cal_max        0.0000 
 +cal_min        0.0000 
 +file_type      NIFTI-1+ 
 +filename       tmp/DICOM_FACEHBI_Florbetaben_20min_20141211120511_5.nii.gz 
 +data_type      FLOAT32 
 +dim1           400 
 +dim2           400 
 +dim3           109 
 +dim4           1 
 +datatype       16 
 +pixdim1        1.018210 
 +pixdim2        1.018210 
 +pixdim3        2.027008 
 +pixdim4        0.000000 
 +cal_max        0.0000 
 +cal_min        0.0000 
 +file_type      NIFTI-1+ 
 +filename       tmp/DICOM_FACEHBI_Florbetaben_4x5min_20141211120511_4.nii.gz 
 +data_type      FLOAT32 
 +dim1           400 
 +dim2           400 
 +dim3           109 
 +dim4           4 
 +datatype       16 
 +pixdim1        1.018210 
 +pixdim2        1.018210 
 +pixdim3        2.027008 
 +pixdim4        1.000000 
 +cal_max        0.0000 
 +cal_min        0.0000 
 +file_type      NIFTI-1+ 
 +</code> 
 + 
 +y me hago un scriptcillo para convertir los DCM, escoger el adecuado usando //fslinfo// y hacer un //fslsplit// en el directorio final, 
 + 
 +<code perl update_fbb.pl> 
 +#!/usr/bin/perl 
 + 
 +use strict; 
 +use warnings; 
 +use NEURO qw(load_study); 
 +use Data::Dump qw(dump); 
 +use File::Find::Rule; 
 + 
 +my $study = "facehbi"; 
 +my %std = load_study($study); 
 +my $src_dir = "/nas/clinic/facehbi"; 
 +my $output_dir = $std{'PET-FBB'}; 
 +my @other_exts = ("nii.gz","json"); 
 + 
 +opendir(my $dh, $src_dir) || die "Can't opendir $src_dir: $!"; 
 +my @adqs = grep {/^[A-Za-z]/} readdir($dh); 
 +closedir $dh; 
 + 
 +foreach my $adq (sort @adqs) { 
 + (my $subject = $adq) =~ s/.*-F(.*)B$/0$1/; 
 + my $order = 'dcm2niix -z y -o '.$std{'DATA'}.'/tmp/ '.$src_dir.'/'.$adq.'/DICOM'; 
 + print "$order\n"; 
 + system($order); 
 + my @conv_files = find(file => 'name' => "*.nii.gz", in => $std{'DATA'}.'/tmp/'); 
 + foreach my $nii_file (@conv_files){ 
 + $order = 'fslinfo '.$nii_file; 
 + my %xinfo; 
 + foreach (qx/$order/){ 
 + my ( $key, $value ) = /(\S+)\s+(\S+)\s*.*/; 
 + $xinfo{$key} =$value; 
 +
 + if($xinfo{"dim4"}>1){ 
 + print "Choosing and moving files\n"; 
 + $order = 'fslsplit '.$nii_file.' '.$output_dir.'/smc'.$subject.'s -t'; 
 + print "$order\n"; 
 + system($order); 
 +
 +
 + print "Cleaning house\n"; 
 + $order = "rm $std{'DATA'}/tmp/*"; 
 + system($order); 
 +
 +</code> 
 + 
 +Lo lanzo desde el directorio del proyecto, 
 +<code> 
 +[osotolongo@detritus facehbi]$ ./update_fbb.pl 
 +</code> 
 +y ya esta, los fbb me quedan ordenados correctamente. 
 +==== de DICOM a NiFTI ====  
 +DELETEME 
 Necesitamos convertir los DICOM de FBB a formato NiFTI-1 para trabajar con FSL. El servidor DICOM corta el numero de slices por directorio a 500 por lo que inicialmente hubo muchisimos problemas de conversion y procesamiento. Necesitamos convertir los DICOM de FBB a formato NiFTI-1 para trabajar con FSL. El servidor DICOM corta el numero de slices por directorio a 500 por lo que inicialmente hubo muchisimos problemas de conversion y procesamiento.
  
Line 95: Line 229:
 </code> </code>
 ++++ ++++
-2.- Usando la informacion de un registro para el resto +2.- Usando la informacion de un registro para el resto (-useg)
 ++++ fbb_regc| ++++ fbb_regc|
 <code bash fbbtemp_regc.sh> <code bash fbbtemp_regc.sh>
Line 140: Line 274:
 </code> </code>
 ++++ ++++
-3.- Usando la informacion solo del cerebro extraido para hacer el corregistro+3.- Usando la informacion solo del cerebro extraido para hacer el corregistro (-useb)
 ++++ fbb_regb| ++++ fbb_regb|
 <code bash fbbtemp_regb.sh> <code bash fbbtemp_regb.sh>
Line 185: Line 319:
 </code> </code>
 ++++ ++++
-4.- el mas complicado, usando una mascara. Este metodo se probo con el [[neuroimagen:pib_troubles|corregistro de PiBs]] y usa un umbral de intensidad +4.- el mas complicado, usando una mascara. Este metodo se probo con el [[neuroimagen:pib_troubles|corregistro de PiBs]] y usa un umbral de intensidad (-usem)
 ++++ fbb_regm| ++++ fbb_regm|
 <code bash fbbtemp_regm.sh> <code bash fbbtemp_regm.sh>
Line 316: Line 450:
  
  ** Note this:** // extract_data | awk 'NR<3{print $0;next}{print $0| "sort -r"}' // ;-)  ** Note this:** // extract_data | awk 'NR<3{print $0;next}{print $0| "sort -r"}' // ;-)
 +
 +<code>
 +$ head -n 1 facehbi_data.csv | sed 's/;/\n/g' | cat -n
 +     1 Subject
 +     2 Gender
 +     3 Education
 +     4 Age
 +     5 FBB
 +     6 HV
 +     7 aHV
 +     8 CMT
 +     9 aCMT
 +    10 WMH
 +    11 nWMH
 +    12 Unclassified_FA_Mean
 +    13 Unclassified_FA_STD
 +    14 Unclassified_MD_Mean
 +    15 Unclassified_MD_STD
 +    16 Middle cerebellar peduncle_FA_Mean
 +    17 Middle cerebellar peduncle_FA_STD
 +    18 Middle cerebellar peduncle_MD_Mean
 +    19 Middle cerebellar peduncle_MD_STD
 +    20 Medial lemniscus L_FA_Mean
 +    21 Medial lemniscus L_FA_STD
 +    22 Medial lemniscus L_MD_Mean
 +    23 Medial lemniscus L_MD_STD
 +    24 Inferior cerebellar peduncle R  _FA_Mean
 +    25 Inferior cerebellar peduncle R  _FA_STD
 +    26 Inferior cerebellar peduncle R  _MD_Mean
 +    27 Inferior cerebellar peduncle R  _MD_STD
 +    28 Inferior cerebellar peduncle L_FA_Mean
 +    29 Inferior cerebellar peduncle L_FA_STD
 +    30 Inferior cerebellar peduncle L_MD_Mean
 +    31 Inferior cerebellar peduncle L_MD_STD
 +    32 Superior cerebellar peduncle R_FA_Mean
 +    33 Superior cerebellar peduncle R_FA_STD
 +    34 Superior cerebellar peduncle R_MD_Mean
 +    35 Superior cerebellar peduncle R_MD_STD
 +    36 Superior cerebellar peduncle L_FA_Mean
 +    37 Superior cerebellar peduncle L_FA_STD
 +    38 Superior cerebellar peduncle L_MD_Mean
 +    39 Superior cerebellar peduncle L_MD_STD
 +    40 Cerebral peduncle R_FA_Mean
 +    41 Cerebral peduncle R_FA_STD
 +    42 Cerebral peduncle R_MD_Mean
 +    43 Cerebral peduncle R_MD_STD
 +    44 Cerebral peduncle L_FA_Mean
 +    45 Cerebral peduncle L_FA_STD
 +    46 Cerebral peduncle L_MD_Mean
 +    47 Cerebral peduncle L_MD_STD
 +    48 Anterior limb of internal capsule R_FA_Mean
 +    49 Anterior limb of internal capsule R_FA_STD
 +    50 Anterior limb of internal capsule R_MD_Mean
 +    51 Anterior limb of internal capsule R_MD_STD
 +    52 Anterior limb of internal capsule L_FA_Mean
 +    53 Anterior limb of internal capsule L_FA_STD
 +    54 Anterior limb of internal capsule L_MD_Mean
 +    55 Anterior limb of internal capsule L_MD_STD
 +    56 Posterior limb of internal capsule R_FA_Mean
 +    57 Posterior limb of internal capsule R_FA_STD
 +    58 Posterior limb of internal capsule R_MD_Mean
 +    59 Posterior limb of internal capsule R_MD_STD
 +    60 Pontine crossing tract (a part of MCP)_FA_Mean
 +    61 Pontine crossing tract (a part of MCP)_FA_STD
 +    62 Pontine crossing tract (a part of MCP)_MD_Mean
 +    63 Pontine crossing tract (a part of MCP)_MD_STD
 +    64 Posterior limb of internal capsule L_FA_Mean
 +    65 Posterior limb of internal capsule L_FA_STD
 +    66 Posterior limb of internal capsule L_MD_Mean
 +    67 Posterior limb of internal capsule L_MD_STD
 +    68 Retrolenticular part of internal capsule R_FA_Mean
 +    69 Retrolenticular part of internal capsule R_FA_STD
 +    70 Retrolenticular part of internal capsule R_MD_Mean
 +    71 Retrolenticular part of internal capsule R_MD_STD
 +    72 Retrolenticular part of internal capsule L_FA_Mean
 +    73 Retrolenticular part of internal capsule L_FA_STD
 +    74 Retrolenticular part of internal capsule L_MD_Mean
 +    75 Retrolenticular part of internal capsule L_MD_STD
 +    76 Anterior corona radiata R_FA_Mean
 +    77 Anterior corona radiata R_FA_STD
 +    78 Anterior corona radiata R_MD_Mean
 +    79 Anterior corona radiata R_MD_STD
 +    80 Anterior corona radiata L_FA_Mean
 +    81 Anterior corona radiata L_FA_STD
 +    82 Anterior corona radiata L_MD_Mean
 +    83 Anterior corona radiata L_MD_STD
 +    84 Superior corona radiata R_FA_Mean
 +    85 Superior corona radiata R_FA_STD
 +    86 Superior corona radiata R_MD_Mean
 +    87 Superior corona radiata R_MD_STD
 +    88 Superior corona radiata L_FA_Mean
 +    89 Superior corona radiata L_FA_STD
 +    90 Superior corona radiata L_MD_Mean
 +    91 Superior corona radiata L_MD_STD
 +    92 Posterior corona radiata R_FA_Mean
 +    93 Posterior corona radiata R_FA_STD
 +    94 Posterior corona radiata R_MD_Mean
 +    95 Posterior corona radiata R_MD_STD
 +    96 Posterior corona radiata L_FA_Mean
 +    97 Posterior corona radiata L_FA_STD
 +    98 Posterior corona radiata L_MD_Mean
 +    99 Posterior corona radiata L_MD_STD
 +   100 Posterior thalamic radiation (include optic radiation) R_FA_Mean
 +   101 Posterior thalamic radiation (include optic radiation) R_FA_STD
 +   102 Posterior thalamic radiation (include optic radiation) R_MD_Mean
 +   103 Posterior thalamic radiation (include optic radiation) R_MD_STD
 +   104 Genu of corpus callosum_FA_Mean
 +   105 Genu of corpus callosum_FA_STD
 +   106 Genu of corpus callosum_MD_Mean
 +   107 Genu of corpus callosum_MD_STD
 +   108 Posterior thalamic radiation (include optic radiation) L_FA_Mean
 +   109 Posterior thalamic radiation (include optic radiation) L_FA_STD
 +   110 Posterior thalamic radiation (include optic radiation) L_MD_Mean
 +   111 Posterior thalamic radiation (include optic radiation) L_MD_STD
 +   112 Sagittal stratum (include inferior longitidinal fasciculus and inferior fronto-occipital fasciculus) R_FA_Mean
 +   113 Sagittal stratum (include inferior longitidinal fasciculus and inferior fronto-occipital fasciculus) R_FA_STD
 +   114 Sagittal stratum (include inferior longitidinal fasciculus and inferior fronto-occipital fasciculus) R_MD_Mean
 +   115 Sagittal stratum (include inferior longitidinal fasciculus and inferior fronto-occipital fasciculus) R_MD_STD
 +   116 Sagittal stratum (include inferior longitidinal fasciculus and inferior fronto-occipital fasciculus) L_FA_Mean
 +   117 Sagittal stratum (include inferior longitidinal fasciculus and inferior fronto-occipital fasciculus) L_FA_STD
 +   118 Sagittal stratum (include inferior longitidinal fasciculus and inferior fronto-occipital fasciculus) L_MD_Mean
 +   119 Sagittal stratum (include inferior longitidinal fasciculus and inferior fronto-occipital fasciculus) L_MD_STD
 +   120 External capsule R_FA_Mean
 +   121 External capsule R_FA_STD
 +   122 External capsule R_MD_Mean
 +   123 External capsule R_MD_STD
 +   124 External capsule L_FA_Mean
 +   125 External capsule L_FA_STD
 +   126 External capsule L_MD_Mean
 +   127 External capsule L_MD_STD
 +   128 Cingulum (cingulate gyrus) R_FA_Mean
 +   129 Cingulum (cingulate gyrus) R_FA_STD
 +   130 Cingulum (cingulate gyrus) R_MD_Mean
 +   131 Cingulum (cingulate gyrus) R_MD_STD
 +   132 Cingulum (cingulate gyrus) L_FA_Mean
 +   133 Cingulum (cingulate gyrus) L_FA_STD
 +   134 Cingulum (cingulate gyrus) L_MD_Mean
 +   135 Cingulum (cingulate gyrus) L_MD_STD
 +   136 Cingulum (hippocampus) R_FA_Mean
 +   137 Cingulum (hippocampus) R_FA_STD
 +   138 Cingulum (hippocampus) R_MD_Mean
 +   139 Cingulum (hippocampus) R_MD_STD
 +   140 Cingulum (hippocampus) L_FA_Mean
 +   141 Cingulum (hippocampus) L_FA_STD
 +   142 Cingulum (hippocampus) L_MD_Mean
 +   143 Cingulum (hippocampus) L_MD_STD
 +   144 Fornix (cres) / Stria terminalis (can not be resolved with current resolution) R_FA_Mean
 +   145 Fornix (cres) / Stria terminalis (can not be resolved with current resolution) R_FA_STD
 +   146 Fornix (cres) / Stria terminalis (can not be resolved with current resolution) R_MD_Mean
 +   147 Fornix (cres) / Stria terminalis (can not be resolved with current resolution) R_MD_STD
 +   148 Body of corpus callosum_FA_Mean
 +   149 Body of corpus callosum_FA_STD
 +   150 Body of corpus callosum_MD_Mean
 +   151 Body of corpus callosum_MD_STD
 +   152 Fornix (cres) / Stria terminalis (can not be resolved with current resolution) L_FA_Mean
 +   153 Fornix (cres) / Stria terminalis (can not be resolved with current resolution) L_FA_STD
 +   154 Fornix (cres) / Stria terminalis (can not be resolved with current resolution) L_MD_Mean
 +   155 Fornix (cres) / Stria terminalis (can not be resolved with current resolution) L_MD_STD
 +   156 Superior longitudinal fasciculus R_FA_Mean
 +   157 Superior longitudinal fasciculus R_FA_STD
 +   158 Superior longitudinal fasciculus R_MD_Mean
 +   159 Superior longitudinal fasciculus R_MD_STD
 +   160 Superior longitudinal fasciculus L_FA_Mean
 +   161 Superior longitudinal fasciculus L_FA_STD
 +   162 Superior longitudinal fasciculus L_MD_Mean
 +   163 Superior longitudinal fasciculus L_MD_STD
 +   164 Superior fronto-occipital fasciculus (could be a part of anterior internal capsule) R_FA_Mean
 +   165 Superior fronto-occipital fasciculus (could be a part of anterior internal capsule) R_FA_STD
 +   166 Superior fronto-occipital fasciculus (could be a part of anterior internal capsule) R_MD_Mean
 +   167 Superior fronto-occipital fasciculus (could be a part of anterior internal capsule) R_MD_STD
 +   168 Superior fronto-occipital fasciculus (could be a part of anterior internal capsule) L_FA_Mean
 +   169 Superior fronto-occipital fasciculus (could be a part of anterior internal capsule) L_FA_STD
 +   170 Superior fronto-occipital fasciculus (could be a part of anterior internal capsule) L_MD_Mean
 +   171 Superior fronto-occipital fasciculus (could be a part of anterior internal capsule) L_MD_STD
 +   172 Uncinate fasciculus R_FA_Mean
 +   173 Uncinate fasciculus R_FA_STD
 +   174 Uncinate fasciculus R_MD_Mean
 +   175 Uncinate fasciculus R_MD_STD
 +   176 Uncinate fasciculus L_FA_Mean
 +   177 Uncinate fasciculus L_FA_STD
 +   178 Uncinate fasciculus L_MD_Mean
 +   179 Uncinate fasciculus L_MD_STD
 +   180 Tapetum R_FA_Mean
 +   181 Tapetum R_FA_STD
 +   182 Tapetum R_MD_Mean
 +   183 Tapetum R_MD_STD
 +   184 Tapetum L_FA_Mean
 +   185 Tapetum L_FA_STD
 +   186 Tapetum L_MD_Mean
 +   187 Tapetum L_MD_STD
 +   188 Splenium of corpus callosum_FA_Mean
 +   189 Splenium of corpus callosum_FA_STD
 +   190 Splenium of corpus callosum_MD_Mean
 +   191 Splenium of corpus callosum_MD_STD
 +   192 Fornix (column and body of fornix)_FA_Mean
 +   193 Fornix (column and body of fornix)_FA_STD
 +   194 Fornix (column and body of fornix)_MD_Mean
 +   195 Fornix (column and body of fornix)_MD_STD
 +   196 Corticospinal tract R_FA_Mean
 +   197 Corticospinal tract R_FA_STD
 +   198 Corticospinal tract R_MD_Mean
 +   199 Corticospinal tract R_MD_STD
 +   200 Corticospinal tract L_FA_Mean
 +   201 Corticospinal tract L_FA_STD
 +   202 Corticospinal tract L_MD_Mean
 +   203 Corticospinal tract L_MD_STD
 +   204 Medial lemniscus R_FA_Mean
 +   205 Medial lemniscus R_FA_STD
 +   206 Medial lemniscus R_MD_Mean
 +   207 Medial lemniscus R_MD_STD
 +   208 Anterior thalamic radiation L_FA_Mean
 +   209 Anterior thalamic radiation L_FA_STD
 +   210 Anterior thalamic radiation L_MD_Mean
 +   211 Anterior thalamic radiation L_MD_STD
 +   212 Forceps minor_FA_Mean
 +   213 Forceps minor_FA_STD
 +   214 Forceps minor_MD_Mean
 +   215 Forceps minor_MD_STD
 +   216 Inferior fronto-occipital fasciculus L_FA_Mean
 +   217 Inferior fronto-occipital fasciculus L_FA_STD
 +   218 Inferior fronto-occipital fasciculus L_MD_Mean
 +   219 Inferior fronto-occipital fasciculus L_MD_STD
 +   220 Inferior fronto-occipital fasciculus R_FA_Mean
 +   221 Inferior fronto-occipital fasciculus R_FA_STD
 +   222 Inferior fronto-occipital fasciculus R_MD_Mean
 +   223 Inferior fronto-occipital fasciculus R_MD_STD
 +   224 Inferior longitudinal fasciculus L_FA_Mean
 +   225 Inferior longitudinal fasciculus L_FA_STD
 +   226 Inferior longitudinal fasciculus L_MD_Mean
 +   227 Inferior longitudinal fasciculus L_MD_STD
 +   228 Inferior longitudinal fasciculus R_FA_Mean
 +   229 Inferior longitudinal fasciculus R_FA_STD
 +   230 Inferior longitudinal fasciculus R_MD_Mean
 +   231 Inferior longitudinal fasciculus R_MD_STD
 +   232 Superior longitudinal fasciculus L_FA_Mean
 +   233 Superior longitudinal fasciculus L_FA_STD
 +   234 Superior longitudinal fasciculus L_MD_Mean
 +   235 Superior longitudinal fasciculus L_MD_STD
 +   236 Superior longitudinal fasciculus R_FA_Mean
 +   237 Superior longitudinal fasciculus R_FA_STD
 +   238 Superior longitudinal fasciculus R_MD_Mean
 +   239 Superior longitudinal fasciculus R_MD_STD
 +   240 Uncinate fasciculus L_FA_Mean
 +   241 Uncinate fasciculus L_FA_STD
 +   242 Uncinate fasciculus L_MD_Mean
 +   243 Uncinate fasciculus L_MD_STD
 +   244 Uncinate fasciculus R_FA_Mean
 +   245 Uncinate fasciculus R_FA_STD
 +   246 Uncinate fasciculus R_MD_Mean
 +   247 Uncinate fasciculus R_MD_STD
 +   248 Superior longitudinal fasciculus (temporal part) L_FA_Mean
 +   249 Superior longitudinal fasciculus (temporal part) L_FA_STD
 +   250 Superior longitudinal fasciculus (temporal part) L_MD_Mean
 +   251 Superior longitudinal fasciculus (temporal part) L_MD_STD
 +   252 Anterior thalamic radiation R_FA_Mean
 +   253 Anterior thalamic radiation R_FA_STD
 +   254 Anterior thalamic radiation R_MD_Mean
 +   255 Anterior thalamic radiation R_MD_STD
 +   256 Superior longitudinal fasciculus (temporal part) R_FA_Mean
 +   257 Superior longitudinal fasciculus (temporal part) R_FA_STD
 +   258 Superior longitudinal fasciculus (temporal part) R_MD_Mean
 +   259 Superior longitudinal fasciculus (temporal part) R_MD_STD
 +   260 Corticospinal tract L_FA_Mean
 +   261 Corticospinal tract L_FA_STD
 +   262 Corticospinal tract L_MD_Mean
 +   263 Corticospinal tract L_MD_STD
 +   264 Corticospinal tract R_FA_Mean
 +   265 Corticospinal tract R_FA_STD
 +   266 Corticospinal tract R_MD_Mean
 +   267 Corticospinal tract R_MD_STD
 +   268 Cingulum (cingulate gyrus) L_FA_Mean
 +   269 Cingulum (cingulate gyrus) L_FA_STD
 +   270 Cingulum (cingulate gyrus) L_MD_Mean
 +   271 Cingulum (cingulate gyrus) L_MD_STD
 +   272 Cingulum (cingulate gyrus) R_FA_Mean
 +   273 Cingulum (cingulate gyrus) R_FA_STD
 +   274 Cingulum (cingulate gyrus) R_MD_Mean
 +   275 Cingulum (cingulate gyrus) R_MD_STD
 +   276 Cingulum (hippocampus) L_FA_Mean
 +   277 Cingulum (hippocampus) L_FA_STD
 +   278 Cingulum (hippocampus) L_MD_Mean
 +   279 Cingulum (hippocampus) L_MD_STD
 +   280 Cingulum (hippocampus) R_FA_Mean
 +   281 Cingulum (hippocampus) R_FA_STD
 +   282 Cingulum (hippocampus) R_MD_Mean
 +   283 Cingulum (hippocampus) R_MD_STD
 +   284 Forceps major_FA_Mean
 +   285 Forceps major_FA_STD
 +   286 Forceps major_MD_Mean
 +   287 Forceps major_MD_STD
 +</code>
 +
 +===== Correccion de movimiento =====
 +
 +{{ :neuroimagen:new_movement_correction_comparison.png?600 |}}
 +
 +
neuroimagen/fbb.1462439272.txt.gz · Last modified: 2020/08/04 10:47 (external edit)