Differences

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--- neuroimagen:cpac [2019/05/30 09:01] – [Integrando en el cluster] osotolongo
+++ neuroimagen:cpac [2020/08/04 10:58] (current) – external edit 127.0.0.1
@@ Line 186: / Line 186: @@
 [[http://detritus.fundacioace.com/files/example_cpac_out.txt|El output completo para cada sujeto se puede ver aqui]].
+{{:neuroimagen:2019-05-30-112300_grim.png|}}
 === Errores ===
+Los errores que se obtienen son muy diversos y parece indicar que tienen que ver mas con la calidad de la adquisicion que con el software en si mismo.No obstante al fallar en distintos puntos del procesamiento es posible que algunos de los sujetos fallidos contengan los archivos de output para algun postprocesdo especifico. En cada caso se ha de buscar si existen estos archivos.
 <code>
@@ Line 196: / Line 200: @@
 -07:56:46,617 nipype.workflow INFO:
          [Node] Finished "resting_preproc_sub-0004_ses-1.sinker_0_13".
+srun: error: brick01: task 0: Exited with exit code 1
+</code>
+<code>
+-08:02:22,31 nipype.workflow INFO:
+         [Node] Outdated cache found for "resting_preproc_sub-0003_ses-1.qc_snr_0.std_dev_anat".
+-08:02:22,347 nipype.workflow INFO:
+         [Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
+applywarp --in=/scratch/working/resting_preproc_sub-0003_ses-1/qc_snr_0/_scan_rest_run-1/std_dev/sub-0003_task-rest_run-1_bold_calc_tshift_resample_volreg_calc_maths_tstat.nii.gz --ref=/scratch/working/resting_preproc_sub-0003_ses-1/anat_preproc_bet_0/anat_skullstrip_orig_vol/sub-0003_T1w_resample_calc.nii.gz --out=/scratch/working/resting_preproc_sub-0003_ses-1/qc_snr_0/_scan_rest_run-1/std_dev_anat/sub-0003_task-rest_run-1_bold_calc_tshift_resample_volreg_calc_maths_tstat_warp.nii.gz --premat=/scratch/working/resting_preproc_sub-0003_ses-1/func_to_anat_bbreg_0/_scan_rest_run-1/bbreg_func_to_anat/sub-0003_task-rest_run-1_bold_calc_tshift_resample_volreg_calc_tstat_flirt.mat --interp=trilinear
+-08:02:25,845 nipype.workflow INFO:
+         [Node] Finished "resting_preproc_sub-0003_ses-1.qc_snr_0.std_dev_anat".
+srun: error: brick01: task 0: Exited with exit code 1
+</code>
+<code>
+nipype.external.portalocker.LockException: (5, 'Input/output error')
+-08:02:21,718 nipype.workflow INFO:
+         [Node] Setting-up "resting_preproc_sub-0009_ses-1.qc_skullstrip_1.montage_skull.montage_a" in "/scratch/working/resting_preproc_sub-0009_ses-1/qc_skullstrip_1/montage_skull/montage_a".
+-08:02:21,892 nipype.workflow INFO:
+         [Node] Outdated cache found for "resting_preproc_sub-0009_ses-1.qc_skullstrip_1.montage_skull.montage_a".
+-08:02:22,252 nipype.workflow INFO:
+         [Node] Setting-up "_montage_a0" in "/scratch/working/resting_preproc_sub-0009_ses-1/qc_skullstrip_1/montage_skull/montage_a/mapflow/_montage_a0".
+-08:02:22,286 nipype.workflow INFO:
+         [Node] Outdated cache found for "_montage_a0".
+-08:02:22,446 nipype.workflow INFO:
+         [Node] Running "_montage_a0" ("CPAC.utils.function.Function")
+-08:02:28,560 nipype.workflow INFO:
+         [Node] Finished "_montage_a0".
+-08:02:28,576 nipype.workflow INFO:
+         [Node] Finished "resting_preproc_sub-0009_ses-1.qc_skullstrip_1.montage_skull.montage_a".
+srun: error: brick01: task 0: Exited with exit code 1
+</code>
+<code>
+nipype.external.portalocker.LockException: (5, 'Input/output error')
+-08:04:01,614 nipype.workflow INFO:
+         [Node] Setting-up "resting_preproc_sub-0001_ses-1.hist_vmhc_fisher_zstd_1" in "/scratch/working/resting_preproc_sub-0001_ses-1/_scan_rest_run-1/_selector_CSF-2mmE-M_aC-CSF+WM-2mm-DPC5_M-SDB_P-2_BP-B0.01-T0.1/_fwhm_4/hist_vmhc_fisher_zstd_1".
+-08:04:01,676 nipype.workflow INFO:
+         [Node] Outdated cache found for "resting_preproc_sub-0001_ses-1.hist_vmhc_fisher_zstd_1".
+-08:04:01,713 nipype.workflow INFO:
+         [Node] Running "hist_vmhc_fisher_zstd_1" ("CPAC.utils.function.Function")
+-08:04:01,899 nipype.workflow INFO:
+         [Node] Finished "resting_preproc_sub-0001_ses-1.hist_vmhc_fisher_zstd_1".
+srun: error: brick03: task 0: Exited with exit code 1
+</code>
+<code>
+         ***********************************
+-09:10:47,524 nipype.workflow ERROR:
+         could not run node: resting_preproc_sub-0014_ses-1.afni_centrality_0_eigenvector.afni_centrality.a0.b0
+-09:10:47,527 nipype.workflow INFO:
+         crashfile: /outputs/crash/crash-20190529-082639-osotolongo-afni_centrality.a0.b0-75dfa3ff-3c39-4800-b04d-c95080370a86.pklz
+-09:10:47,530 nipype.workflow ERROR:
+         could not run node: resting_preproc_sub-0014_ses-1.afni_centrality_1_eigenvector.afni_centrality.a0.b0
+-09:10:47,533 nipype.workflow INFO:
+         crashfile: /outputs/crash/crash-20190529-083301-osotolongo-afni_centrality.a0.b0-ee039f25-50ce-43c6-b64b-0d32355dd8c9.pklz
+-09:10:47,535 nipype.workflow INFO:
+         ***********************************
+</code>
+<code>
+nipype.external.portalocker.LockException: (5, 'Input/output error')
+-09:37:12,642 nipype.workflow INFO:
+         [Node] Running "_apply_ants_warp_mapnode6" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
+antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /scratch/working/resting_preproc_sub-0010_ses-1/temporal_dual_regression_0/_scan_rest_run-1/_selector_CSF-2mmE-M_aC-CSF+WM-2mm-DPC5_G-M_M-SDB_P-2_BP-B0.01-T0.1/_spatial_map_PNAS_Smith09_rsn10_spatial_map_file_..cpac_templates..PNAS_Smith09_rsn10.nii.gz/split_raw_volumes/temp_reg_map_0006.nii.gz --input-image-type 0 --interpolation Linear --output temp_reg_map_0006_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_3mm_brain.nii.gz --transform /scratch/working/resting_preproc_sub-0010_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform3Warp.nii.gz --transform /scratch/working/resting_preproc_sub-0010_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform2Affine.mat --transform /scratch/working/resting_preproc_sub-0010_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Rigid.mat --transform /scratch/working/resting_preproc_sub-0010_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0DerivedInitialMovingTranslation.mat --transform /scratch/working/resting_preproc_sub-0010_ses-1/dr_tempreg_maps_files_fsl_to_itk_0/_scan_rest_run-1/_selector_CSF-2mmE-M_aC-CSF+WM-2mm-DPC5_G-M_M-SDB_P-2_BP-B0.01-T0.1/_spatial_map_PNAS_Smith09_rsn10_spatial_map_file_..cpac_templates..PNAS_Smith09_rsn10.nii.gz/change_transform_type/mapflow/_change_transform_type6/updated_affine.txt
+-09:37:13,368 nipype.workflow INFO:
+         [Node] Finished "_apply_ants_warp_mapnode6".
 srun: error: brick01: task 0: Exited with exit code 1
 </code>