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To perform statistic analysis we'll use PLINK/SEQ, which acdcepts VCF files. It is similar in lexic to PLINK, traditionally used for GWAS data.

As today (March, 2015) there are some features of PLINK/SEQ which do not perform perfect, such as its R library, because they say they are developing a beta version to be released “soon”. However, there is a basic tutorial, and a extended tutorial which are sufficient to allow you to play around with your data, get basic statistics and analysis.

genetica/stats_process.txt · Last modified: 2020/08/04 10:58 (external edit)