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genetica:ld_struc [2013/08/13 13:51]
osotolongo created
genetica:ld_struc [2020/08/04 10:58] (current)
Line 13: Line 13:
 From this small piece I want to calculate the LD matrix. Let me see, 2MB^2 = 4e12 bases. So I will end with a theoretical matrix of 4e12 elements. Must be a little less cause no all the positions are filled. From this small piece I want to calculate the LD matrix. Let me see, 2MB^2 = 4e12 bases. So I will end with a theoretical matrix of 4e12 elements. Must be a little less cause no all the positions are filled.
  
 +
 +So my next step will be 
 +
 +<code>
 +plink --bfile 1kg_chr6_20_22 --r2 --matrix --allow-no-sex --out 1kg_chr6_20_22_ldmap
 +</code>
genetica/ld_struc.1376401903.txt.gz ยท Last modified: 2020/08/04 10:48 (external edit)