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cluster:instalar_nodo

Post install para nodos nuevos

config

  • añadir al fstab
172.26.6.40:/Investigacion	/the_dysk	nfs	nfsvers=4,defaults,exec,suid	0 0
172.26.6.40:/Investigacion/nas	/home	nfs	nfsvers=4,defaults,exec	0 0
172.26.6.40:/Almacen	/almacen	nfs	nfsvers=4,defaults,exec	0 0
172.26.2.34:/share/MD0_DATA/Public    /old_nas    nfs     defaults        0 0
  • clonar usuarios y grupos
  • ssh rsa auth para root
  • usuarios de sistema: munge, brecia, xnat deben tener mismos uid y gid

Dependencias

FSL

dependencias a instalar con yum

sistema:

vim epel-release nfs-utils munge yum-utils

slurm

slurm-20.02.4-1.el7.x86_64.rpm slurm-perlapi-20.02.4-1.el7.x86_64.rpm slurm-slurmd-20.02.4-1.el7.x86_64.rpm

postfix:

cyrus-sasl cyrus-sasl-plain

R:

libjpeg-turbo-devel pango-devel libpng12 libmng cairo-devel libcurl-devel libxml2-devel libgit2-devel gmp-devel 
gcc-gfortran gcc-c++ readline-devel bzip2-devel pcre2-devel 
texinfo texlive-inconsolata tex texlive-scheme-basic texinfo-tex texlive-titling
java-1.8.0-openjdk

Freesurfer:

tcsh

containers:

singularity

convenience:

jq htop curl

devtoolset: https://www.softwarecollections.org/en/scls/rhscl/devtoolset-8/

centos-release-scl
scl-utils devtoolset-8

R

lista de paquetes,

A lo loco,

[root@brick04 ~]# for x in `cat /home/osotolongo/rpacks.list`; do Rscript -e "install.packages('${x}', repos='https://cran.rediris.es/')"; done

Revisando,

[root@brick04 ~]# for x in `cat /home/osotolongo/rpacks.list`; do Rscript -e "library('${x}')"; done 2>&1 | grep Error
Error in library("HIBAG") : there is no package called ‘HIBAG’
Error in library("SAIGE") : there is no package called ‘SAIGE’
Error in library("MADloy") : there is no package called ‘MADloy’
Error in library("genoCN") : there is no package called ‘genoCN’
Error in library("TwoSampleMR") : 

ahora mas despacio,

install.packages("devtools")
devtools::install_github("MRCIEU/TwoSampleMR")

y por otra parte

install.packages("BiocManager")
BiocManager::install("genoCN")
BiocManager::install("HIBAG")
cluster/instalar_nodo.txt · Last modified: 2020/12/28 21:58 by osotolongo