#!/bin/bash

#NOTA: requires dicom3tools' dcmkey

ARGS=( "$@" )

#parse arguments
USER=""
PASSWORD=""
URL=""
SERIES=""
for ((n=0; n<${#ARGS[@]}; n++)) ; do
	case "${ARGS[$n]}" in
	-u)
		let n=n+1
		USER="${ARGS[$n]}"
		;;
	-p)
		let n=n+1
		PASSWORD="${ARGS[$n]}"
		;;
	-U)
		let n=n+1
		URL="${ARGS[$n]}"
		;;
	-*) echo "Skipping option ${ARGS[$n]}" >&2
		;;
	*)
		SERIES="${ARGS[$n]}"
		;;
	esac
done

echo "USER=$USER"
echo "PASSWORD=$PASSWORD"
echo "URL=$URL"
echo "SERIES=$SERIES"

#temporaries
TMP_PRO=$(mktemp)

#Tipos de estudios
cat > $TMP_PRO <<.EOF
ep2d_bold_p2_resting_state
ep2d_fid_basic_bold_p2_AP 
ep2d_fid_basic_bold_p2_PA 
asl_3d_tra_iso_3.0_highres
DTIep2d_diff_mddw_48dir_p3_AP 
DTIep2d_diff_mddw_4b0_PA
t1_mprage_sag_p2_iso
t2_space_dark-fluid_sag_p2_iso
.EOF

#Archivos de la misma serie ($4 único), con fechas y descripciones, filtrados por tipo de estudio
DCM="$(ls "$SERIES" | head -n 1)"
dckey -k "AcquisitionDate" "$SERIES/$DCM" 2>&1 | grep -v Error &&\
dckey -k "SeriesDescription" "$SERIES/$DCM" 2>&1 | grep -v Error | grep -v -f $TMP_PRO &&\
$HOME/pipeline/xnat-tools/XnatDataClient -u $USER -p $PASSWORD -r "$URL/$SERIES" -m DELETE

#Dejar todo limpio
rm -f  $TMP_PRO