#!/usr/bin/env tcsh # created by uber_subject.py: version 0.36 (April 5, 2013) # creation date: Fri Jan 24 16:33:30 2020 # set data directories set top_dir = /nas/data//bids/ set anat_dir = $top_dir/anat set epi_dir = $top_dir/func # set subject and group identifiers set subj = set group_id = all # run afni_proc.py to create a single subject processing script afni_proc.py -subj_id $subj \ -script proc.$subj -scr_overwrite \ -blocks despike tshift align tlrc volreg blur mask regress \ -copy_anat \ -tcat_remove_first_trs 0 \ -dsets \ -volreg_align_to third \ -volreg_align_e2a \ -volreg_tlrc_warp \ -blur_size 4.0 \ -regress_bandpass 0.01 0.1 \ -regress_apply_mot_types demean deriv \ -regress_reml_exec \ -regress_est_blur_errts